BtaEX6093937 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21814460-21821482:-
Coord C1 exon
chr22:21821336-21821482
Coord A exon
chr22:21816473-21816568
Coord C2 exon
chr22:21814460-21814504
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATCATTTCTCTTCTTGCAGGTG
3' ss Score
11.07
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGTGACGTGGTGAGGCTGTTCCATGCCGAGCAGGAGAAGTTTCTCACCTGTGACGAGCACAGGAAGAAGCAGCACGTCTTTCTGAGAACCACCGGCCGGCAGTCTGCCACGTCCGCCACCAGCTCAAAAGCCCTGTGGGAGGTGGAG
Seq A exon
GTGGTCCAACATGACCCATGTCGGGGAGGAGCAGGGTACTGGAACAGCCTCTTCCGTTTCAAGCATCTTGCTACCGGGCATTACTTAGCAGCAGAG
Seq C2 exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'7-8,'7-7,8-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.8=100)
A:
PF0281514=MIR=FE(15.3=100)
C2:
PF0281514=MIR=FE(6.9=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGTGGTGAGGCTGTTC
R:
ACTCCAGGCATTCTTCCTCAA
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]