GgaEX6010811 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19073682-19076718:+
Coord C1 exon
chr12:19073682-19073828
Coord A exon
chr12:19075217-19075312
Coord C2 exon
chr12:19076674-19076718
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCCTTTCACTGCAGGTG
3' ss Score
11.8
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGGGATGTAGTAAGATTGTTTCATGCAGAGCAGGAGAAGTTTCTGACTTGTGATGAGCACAGGAAAAAGCAGCACGTCTTCCTGAGAACGACGGGGAGGCAGTCTGCCACTTCTGCAACCAGCTCAAAAGCACTGTGGGAGGTAGAG
Seq A exon
GTGGTACAGCATGATCCTTGTCGTGGCGGTGCAGGGTACTGGAACAGTCTGTTCAGGTTCAAACACCTTGCTACTGGACACTACTTAGCGGCAGAG
Seq C2 exon
GTAAACCCTGACTATGAGGAAGATGACCAGGAGTGTCAATCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'11-11,'11-10,12-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.800
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.8=100)
A:
PF0281514=MIR=FE(15.3=100)
C2:
PF0281514=MIR=FE(6.9=100)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGCAGGAGAAGTTTCTG
R:
TGAGGATTGACACTCCTGGTCA
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]