Special

GgaEX6010811 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18430046-18433082:+
Coord C1 exon
chr12:18430046-18430192
Coord A exon
chr12:18431581-18431676
Coord C2 exon
chr12:18433038-18433082
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCCTTTCACTGCAGGTG
3' ss Score
11.8
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGGGATGTAGTAAGATTGTTTCATGCAGAGCAGGAGAAGTTTCTGACTTGTGATGAGCACAGGAAAAAGCAGCACGTCTTCCTGAGAACGACGGGGAGGCAGTCTGCCACTTCTGCAACCAGCTCAAAAGCACTGTGGGAGGTAGAG
Seq A exon
GTGGTACAGCATGATCCTTGTCGTGGCGGTGCAGGGTACTGGAACAGTCTGTTCAGGTTCAAACACCTTGCTACTGGACACTACTTAGCGGCAGAG
Seq C2 exon
GTAAACCCTGACTATGAGGAAGATGACCAGGAGTGTCAATCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'12-17,'12-16,13-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.143 A=0.000 C2=0.800
Domain overlap (PFAM):

C1:
PF0281514=MIR=FE(23.8=100)
A:
PF0281514=MIR=FE(15.3=100)
C2:
PF0281514=MIR=FE(6.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGCAGGAGAAGTTTCTG
R:
TGAGGATTGACACTCCTGGTCA
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]