RnoEX0045384 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140379368-140398464:+
Coord C1 exon
chr4:140379368-140379514
Coord A exon
chr4:140396682-140396777
Coord C2 exon
chr4:140398420-140398464
Length
96 bp
Sequences
Splice sites
3' ss Seq
AACCATCTCTGCTCTTGCAGGTA
3' ss Score
10.37
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGTGATGTGGTAAGACTCTTCCATGCTGAGCAAGAGAAGTTTCTCACGTGCGATGAGCACAGGAAGAAGCAGCACGTCTTCCTGAGGACAACCGGCAGACAGTCAGCCACGTCGGCCACCAGCTCCAAAGCCCTGTGGGAAGTGGAG
Seq A exon
GTAGTCCAGCATGACCCATGTCGGGGTGGAGCTGGGTACTGGAATAGCCTCTTCCGGTTCAAGCACCTGGCTACAGGGCATTACTTGGCAGCAGAG
Seq C2 exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'24-19,'24-17,25-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.8=100)
A:
PF0281514=MIR=FE(15.3=100)
C2:
PF0281514=MIR=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTCCATGCTGAGCAAGA
R:
ACTCCAGGCATTCTTCCTCAA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]