MmuEX6006029 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108289501-108302145:+
Coord C1 exon
chr6:108289501-108289616
Coord A exon
chr6:108299592-108299678
Coord C2 exon
chr6:108301987-108302145
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTGTCAATGTTCCAGCAT
3' ss Score
6.5
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACTGCCTCTTTAAGCTATGTCCTATGAATCGATACTCCGCACAGAAACAGTTCTGGAAAGCTGCTAAGCCCGGGGCCAACAGCACTACAGATGCAGTGCTGCTCAACAAATTGCAT
Seq A exon
CATGCTGCAGACTTGGAAAAGAAGCAGAATGAGACAGAAAACAGGAAATTGTTGGGGACCGTCATCCAATATGGCAACGTGATCCAG
Seq C2 exon
CTCCTGCATTTGAAAAGCAATAAATACCTGACTGTGAATAAGAGGCTCCCAGCCTTGCTAGAGAAGAACGCCATGAGGGTGACGTTGGACGAGGCTGGAAATGAAGGGTCCTGGTTTTACATTCAACCATTCTACAAGCTTCGCTCCATCGGAGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(16.8=100)
A:
PF087096=Ins145_P3_rec=FE(12.4=100)
C2:
PF087096=Ins145_P3_rec=FE(23.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATACTCCGCACAGAAACAGT
R:
CACCCTCATGGCGTTCTTCTC
Band lengths:
168-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: