Special

GgaEX6010814 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18424039-18428053:+
Coord C1 exon
chr12:18424039-18424154
Coord A exon
chr12:18426856-18426942
Coord C2 exon
chr12:18427895-18428053
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTGCTCCAATTTCAGCAT
3' ss Score
7.83
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATTGCCTGTTCAAACTATGTCCCATGAACCGGTACTCTGCTCAAAAACAGTTCTGGAAAGCAGCAAAGCCAGGAGCCAACAGCACGACAGATGCAGTGCTGCTCAACAAGCTTCAC
Seq A exon
CATGCAGCCGATTTGGAAAAGAAGCAGAATGAAACTGAAAACAGAAAGCTGCTGGGAACAGTTATCCAGTATGGCAATGTGATCCAG
Seq C2 exon
CTGCTTCACTTAAAAAGTAACAAATACTTAACAGTAAATAAGAGACTGCCAGCTCTACTAGAGAAGAATGCCATGAGGGTGACCTTGGATGAAGCTGGAAATGAAGGCTCCTGGTTCTACATACAGCCATTCTACAAACTGCGCTCCATTGGAGACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.168 C2=0.000
Domain overlap (PFAM):

C1:
PF087096=Ins145_P3_rec=FE(16.8=100)
A:
PF087096=Ins145_P3_rec=FE(12.4=100)
C2:
PF087096=Ins145_P3_rec=FE(23.0=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGAAAGCAGCAAAGCCA
R:
CCAGGAGCCTTCATTTCCAGC
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]