Special

BtaEX6093932 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21824969-21838921:-
Coord C1 exon
chr22:21838805-21838921
Coord A exon
chr22:21827151-21827237
Coord C2 exon
chr22:21824969-21825127
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCCTCCATAAACAGCAT
3' ss Score
8.2
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GATTGCCTCTTTAAACTATGTCCCATGAATCGCTACTCTGCCCAGAAGCAGTTCTGGAAAGCTGCTAAGCCAGGAGCCAACAGCACGACAGACGCAGTGCTGCTCAACAAATTGCAC
Seq A exon
CATGCTGCAGACTTGGAAAAGAAGCAGAATGAGACTGAAAACAGGAAGTTGCTGGGTACCGTGATCCAGTATGGCAACGTGATCCAG
Seq C2 exon
CTACTGCATCTGAAAAGTAATAAATACCTAACTGTGAATAAGAGGCTTCCGGCTCTGCTGGAGAAGAATGCCATGAGAGTGACATTGGATGAGGCCGGAAACGAAGGGTCCTGGTTTTACATTCAGCCATTCTACAAGCTGCGATCCATCGGAGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.172 C2=0.000
Domain overlap (PFAM):

C1:
PF087096=Ins145_P3_rec=PU(21.7=97.4)
A:
PF087096=Ins145_P3_rec=FE(16.0=100)
C2:
PF087096=Ins145_P3_rec=FE(29.7=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAATCGCTACTCTGCCC
R:
GGCATTCTTCTCCAGCAGAGC
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]