DreEX6092736 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35712957-35716673:-
Coord C1 exon
chr11:35716558-35716673
Coord A exon
chr11:35715311-35715397
Coord C2 exon
chr11:35712957-35713115
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCGTTTTCTCCAGCAT
3' ss Score
9.48
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACTGTCAGTTCAGGTTGTGTCCCATGAACAGATACTCGGCCCAGAAACAGTTCTGGAAAGCAGCAAAGCCTGGTGGAAACAGCACCACAGACACTGTACTACTCAACAAACTACAC
Seq A exon
CATGCTGCAGATCTGGAGAAGAAGCAGAATGAATCGGAGAACCGTAAGCTGCTGGGAACGGTGATCCAGTATGGAAATGTTATTCAG
Seq C2 exon
CTGCTGCATTTAAAAAGCAATAAGTACCTGACGGTGAATAAACGCCTGCCGGCTCTGCTGGAGAAGAACGCCATGCGTGTGACGTTGGACTCGGCTGGAAATGAAGGATCCTGGTTTTACATCCAGCCCTTCTACAAGCTGCGCTCCATTGGAGATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(16.8=100)
A:
PF087096=Ins145_P3_rec=FE(12.4=100)
C2:
PF087096=Ins145_P3_rec=FE(23.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGAAAGCAGCAAAGCCT
R:
CCTTCATTTCCAGCCGAGTCC
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]