RnoEX0045381 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140362471-140375398:+
Coord C1 exon
chr4:140362471-140362586
Coord A exon
chr4:140372957-140373043
Coord C2 exon
chr4:140375240-140375398
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTGTCAATGTCACAGCAT
3' ss Score
5.47
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACTGCCTCTTTAAGCTATGTCCTATGAATCGATATTCTGCACAGAAGCAGTTCTGGAAAGCTGCTAAGCCCGGGGCCAACAGTACAACAGATGCGGTGCTGCTCAACAAATTGCAT
Seq A exon
CATGCTGCAGACTTGGAAAAGAAGCAGAATGAGACAGAAAACAGGAAATTGCTGGGGACGGTCATCCAGTATGGCAACGTGATCCAG
Seq C2 exon
CTCCTACATTTGAAAAGCAATAAATACTTAACTGTGAATAAGAGGCTTCCTGCCCTGCTGGAGAAGAACGCCATGAGAGTGACGTTGGATGAGGCTGGAAATGAAGGGTCTTGGTTTTACATTCAGCCGTTCTACAAGCTCCGCTCCATCGGAGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'19-11,'19-10,20-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(18.8=100)
A:
PF087096=Ins145_P3_rec=FE(13.9=100)
C2:
PF087096=Ins145_P3_rec=FE(25.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGTTCTGGAAAGCTGCT
R:
CAGCCTCATCCAACGTCACTC
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]