MmuEX6008390 @ mm9
Exon Skipping
Gene
ENSMUSG00000030386 | Zfp606
Description
zinc finger protein 606 [Source:MGI Symbol;Acc:MGI:1914620]
Coordinates
chr7:13066284-13075393:+
Coord C1 exon
chr7:13066284-13066375
Coord A exon
chr7:13074919-13075045
Coord C2 exon
chr7:13075298-13075393
Length
127 bp
Sequences
Splice sites
3' ss Seq
GATCATATATGCTCTTTCAGGAA
3' ss Score
9.23
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTCTGTGTCCTCAGGATCCAGCATGGCACATGGAGGGAAGCGCTGAGGAGGACGGAAGAAAGACAGGTGGGCTCCCAGTAGCCCAAGTCGAG
Seq A exon
GAACCAGTGACTTTCAAAGATGTGGCTGTGGCCTTTACCCAAGAAGAATGGGGACAGCTAGACCTTGTTCAGCGGACTCTGTACCGTGATGTGATGCTGGAGACCTATGGACACCTACTTTCTGTGG
Seq C2 exon
GGAATCAGATTGCTAAGCCTGAAGTCATCTCCCTTTTGGAACAAGGAGAAGAGCCATGGTCAGTGGAGCAAGGATATCCTAAAAGCAGTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030386-'7-10,'7-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTCCTCAGGATCCAGC
R:
TGGACAACTGCTTTTAGGATATCC
Band lengths:
186-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: