RnoEX0101546 @ rn6
Exon Skipping
Gene
ENSRNOG00000019127 | Zfp606
Description
zinc finger protein 606 [Source:RGD Symbol;Acc:1309810]
Coordinates
chr1:66237010-66253779:-
Coord C1 exon
chr1:66253688-66253779
Coord A exon
chr1:66237363-66237489
Coord C2 exon
chr1:66237010-66237102
Length
127 bp
Sequences
Splice sites
3' ss Seq
GATCATCTATGCACTTTCAGGAA
3' ss Score
8.74
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTCTATGCCCTCAGGATCCAGCATGGCACATAGAGGGAAGCCCTGAGGAGAGCAGAAGACAGGCAGATGGGCTTCAAACAGCCCAAGACCAG
Seq A exon
GAACCAGTGACTTTCAAAGATGTGGCTGTGGCCTTTACCCAAGAAGAATGGGAGCAGCTAGACCTTGTTCAGCGGACTCTGTACCGTGATGTGATGCTAGAGACTTATGGACACCTACTTTCTGTGG
Seq C2 exon
GGAATCAGATTGCTAAGCCTGAAGTCATCTCCCTTTTGGAACAAGAAGAGCCATGGTCACTGGAGCAAGGATATCCTAAGAGCAGCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019127_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATGCCCTCAGGATCCAGC
R:
CTGGACAGCTGCTCTTAGGAT
Band lengths:
184-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]