HsaEX6096977 @ hg38
Exon Skipping
Gene
ENSG00000166704 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr19:57988207-58000739:-
Coord C1 exon
chr19:58000683-58000739
Coord A exon
chr19:57988595-57988721
Coord C2 exon
chr19:57988207-57988302
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAACGTTTGTGTTCTTTTAGGAA
3' ss Score
9.87
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTGCCCTTACGGACCAATCTTGGGGGATGACAGCTGTTGACCCATGGGCCTCCTGGG
Seq A exon
GAACCAGTGACCTTCAAGGACGTGGCCGTGGACTTCACCCAAGAAGAGTGGGGGCAGCTGGACCTTGTTCAGAGGACCCTGTACCGTGATGTGATGCTGGAGACCTATGGTCACCTGCTCTCTGTGG
Seq C2 exon
GAAATCAGATTGCCAAGCCTGAGGTCATCTCCCTGTTGGAGCAAGGAGAAGAGCCGTGGTCAGTGGAGCAGGCATGTCCTCAACGCACTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166704-'5-9,'5-8,16-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.243 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENST00000341164fB30845
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTTACGGACCAATCTT
R:
GGACAAGTGCGTTGAGGACAT
Band lengths:
151-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains