BtaEX6084490 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003456 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr18:65653541-65664581:-
Coord C1 exon
chr18:65664493-65664581
Coord A exon
chr18:65653868-65653994
Coord C2 exon
chr18:65653541-65653639
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAACATGTCTGGTCTTTTAGGAA
3' ss Score
8.05
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
CTCTGTGCCCTCAGGACTCTACCTGGCAAATGGAGGAGACCGCCGAAGAGAGGAGGAGGGCCCCAGGGCTCCCAACAGCCCAGGCCCAG
Seq A exon
GAACCAGTGACCTTCAATGATGTGGCTGTGGACTTCACACAAGAGGAGTGGGGGCAGCTGGACCTTGTTCAGAGGACCCTGTACCGTGACGTGATGCTGGAGACCTATGGGCACCTGCTCTCTGTAG
Seq C2 exon
GGAATCAGATCACCAAGCCTGAGGTCATCTCCCTGTTGGAGCAAGGAGAAGAGCCATGGTCAATGGAACCAGCATATCCTCTTCAAGGCACTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003456-'4-8,'4-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.070 C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGCCCTCAGGACTCTAC
R:
CTGGACAAGTGCCTTGAAGAG
Band lengths:
187-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]