MmuEX6009487 @ mm9
Exon Skipping
Gene
ENSMUSG00000054083 | Capn12
Description
calpain 12 [Source:MGI Symbol;Acc:MGI:1891369]
Coordinates
chr7:29675343-29677754:+
Coord C1 exon
chr7:29675343-29675405
Coord A exon
chr7:29675930-29676008
Coord C2 exon
chr7:29677638-29677754
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTCTCCACCTTCCAGGCC
3' ss Score
10.61
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
CGTGGGCAAAGACTGTCCCTACACCACTTCCAGGAGCTCTGGGGCCATCTCATGTCATGGCAG
Seq A exon
GCCACATTTGACAAGTTTGATGAAGATGCCTCTGGGACAATGAACTCCTGTGAACTGAGGCTGGCACTGACTGCTGCAG
Seq C2 exon
GCTTCCACCTCAACAACCAGCTGACCCAGTCCCTCACTAGCCGCTACCGGGACAGCCGGCTCCGTGTGGACTTCGAGCGCTTCGTGTGCTGTGCAGCCCGGCTCACCTGCATCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054083-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PU(6.2=9.5)
A:
PF134051=EF-hand_6=FE(81.2=100)
C2:
PF134051=EF-hand_6=PD(6.2=5.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCTACACCACTTCCAGG
R:
GGAAGATGCAGGTGAGCCG
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: