RnoEX0016679 @ rn6
Exon Skipping
Gene
ENSRNOG00000020389 | Capn12
Description
calpain 12 [Source:RGD Symbol;Acc:1307341]
Coordinates
chr1:87075013-87077427:+
Coord C1 exon
chr1:87075013-87075075
Coord A exon
chr1:87075563-87075641
Coord C2 exon
chr1:87077311-87077427
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGCCTGCCTCCATCCTCCAGGCC
3' ss Score
10.52
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
CGTGGGCAAAGATTGGCCCTATACCACTTCCAGGAACTCTGGGGCCATCTCCTGTCATGGCAG
Seq A exon
GCCACATTTGACAAGTTCGATGAAGATGCTTCTGGGACAATGAACTCCTGTGAACTGAGGCTGGCACTGACTGCCGCAG
Seq C2 exon
GCTTCCACCTGAACAACCAGCTGACCCAGGCTCTCACTAGCCGCTACCGAAACAGCCGGCTCCGCGTGGACTTCGAGCACTTTGTGTGTTGTGCAGCCCGGCTCACCTGCATCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020389_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCTATACCACTTCCAGG
R:
GGAAGATGCAGGTGAGCCG
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]