BtaEX6082183 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013239 | CAPN12
Description
Bos taurus calpain 12 (CAPN12), mRNA. [Source:RefSeq mRNA;Acc:NM_001192697]
Coordinates
chr18:48743861-48747874:-
Coord C1 exon
chr18:48747812-48747874
Coord A exon
chr18:48746911-48746989
Coord C2 exon
chr18:48743861-48743977
Length
79 bp
Sequences
Splice sites
3' ss Seq
ACCCAGACCTCCCTGCCCAGGCC
3' ss Score
4.81
5' ss Seq
CGGGTATGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
CATGGGGGAAGCCTGGACTTGTACCACTTCCAGCAGCTCTGGGGCCACCTCCTGGAGTGGCAG
Seq A exon
GCCACATTCGATAAGTTCGACGAGGACGCCTCTGGAACCATGAACTCCTATGAGCTGAGGCTGGCGCTGAATGCGGCGG
Seq C2 exon
GCTTCCACCTGAACAACCAGCTGACCCAGGCTCTCACGAGCCGATACCGTGACAGCCGCCTGCGTGTGGACTTTGAGCGCTTCGTGTCCTGCATGGCCCAGCTCATCTGCGTCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013239-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PU(6.2=9.5)
A:
PF134051=EF-hand_6=FE(81.2=100)
C2:
PF134051=EF-hand_6=PD(6.2=5.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGACTTGTACCACTTCC
R:
GGAAGACGCAGATGAGCTGG
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]