MmuEX6009500 @ mm9
Exon Skipping
Gene
ENSMUSG00000054083 | Capn12
Description
calpain 12 [Source:MGI Symbol;Acc:MGI:1891369]
Coordinates
chr7:29667789-29670915:+
Coord C1 exon
chr7:29667789-29667907
Coord A exon
chr7:29668147-29668280
Coord C2 exon
chr7:29670747-29670915
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTTCTTCACCAGCTA
3' ss Score
7.73
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GAAACTGCTGGCTTCTTGCAGCTGCTGCCTCCCTCACACTCTACCCCAGGCTCCTGTACCGGGTGGTCCCCCCTGGACAAGGTTTCCAAGATGGCTACGCGGGGGTCTTCCATTTTCAG
Seq A exon
CTATGGCAGTTTGGCCGCTGGGTGGATGTGGTGGTAGACGACAAACTGCCTGTGCGTGAGGGGAAGCTGATGTTCGTGCGCTCAGAACAAAGGAACGAGTTCTGGGCCCCTCTGCTGGAAAAGGCCTATGCCAA
Seq C2 exon
GCTCCATGGCTCCTACGAGGTAATGCGAGGAGGTCACATGAACGAGGCTTTTGTGGACTTTACAGGAGGCGTGGGTGAGGTCCTCTACTTGAGACAAAACACTCCAGGTGTCTTTGCTGCCCTTCGCCACGCATTGGCCAAGGAGTCCCTTGTGGGTGCTACTGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054083-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.1=100)
A:
PF0064816=Peptidase_C2=FE(14.8=100)
C2:
PF0064816=Peptidase_C2=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTGCTGGCTTCTTGCAG
R:
GAAGGGCAGCAAAGACACCTG
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: