BtaEX6082172 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013239 | CAPN12
Description
Bos taurus calpain 12 (CAPN12), mRNA. [Source:RefSeq mRNA;Acc:NM_001192697]
Coordinates
chr18:48752903-48754537:-
Coord C1 exon
chr18:48754419-48754537
Coord A exon
chr18:48754100-48754233
Coord C2 exon
chr18:48752903-48753080
Length
134 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCATCCCCCCACCAGCTC
3' ss Score
7.71
5' ss Seq
TAAGTAAGG
5' ss Score
5.07
Exon sequences
Seq C1 exon
GTAACTGCTGGTTTCTTGCGGCTGCTGCCTCCCTCACTCTGTACCCCCGACTCCTGTCCCGAGTGGTCCCCCCGGGACAGGGCTTCCAACATGGCTACGCAGGTGTCTTCCACTTCCAG
Seq A exon
CTCTGGCAGTTTGGCCACTGGGTGGACGTCGTGGTGGACGACAGGCTGCCTGTGTGCAAGGGGAAGCTGATGTTCGTGTGCTCCGATCAGCGGAACGAGTTCTGGGCTCCGCTCCTGGAAAAGGCCTATGCTAA
Seq C2 exon
GCTCCACGGCTCCTATGAGGTGATGCGAGGCGGCCACATGAATGAGGCTTTTGTGGACTTCACAGGGGGCGTAGGTGAGGTGCTTTACCTGAAGAAGGACACTCCAAACCCTCCGGGCATCTTCTCCATCCTGCGCCATGCCCTGGCCAAGGAGTCCCTCGTGGGGGCCACTGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013239-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.0=100)
A:
PF0064816=Peptidase_C2=FE(14.7=100)
C2:
PF0064816=Peptidase_C2=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTGCTGGTTTCTTGCGGC
R:
ATGGCGCAGGATGGAGAAGAT
Band lengths:
257-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]