DreEX6085040 @ danRer10
Exon Skipping
Gene
ENSDARG00000055338 | CAPN1 (2 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr21:27460584-27468288:-
Coord C1 exon
chr21:27468170-27468288
Coord A exon
chr21:27461221-27461354
Coord C2 exon
chr21:27460584-27460752
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTTTCTAATGTGTCCTCTAGTTT
3' ss Score
7.93
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTGATTGTTGGCTGCTGGCGGCCATTGCGTGCCTTACACTAAACGAACCCTTGCTGCGACGGGTGGTTCCTCATGGCCAGAGCTTCCATCAGCAATATGCCGGAATATTTCACTTCCAG
Seq A exon
TTTTGGCAGTTTGGGGACTGGGTGGATGTGGTGATTGATGACCGGCTGCCTGTCAGAGACGGAAAGCTGCTTTTCGTCCACTCAGCTGAAGGATCAGAGTTCTGGAGCGCCCTGGTGGAGAAGGCTTATGCAAA
Seq C2 exon
GTTGAATGGCTGCTATGAGGCTTTATCCGGAGGCAGCACATCTGAAGGCTTTGAGGACTTCACCGGTGGAGTGACTGAGATGTATGAGCTGAAAAACGCTCCACCAAACCTTTTCAGCATCATCACACGAGCTGTGGAGAGAGGCTCCCTCATGGGCTGCTCTATAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055338-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.0=100)
A:
PF0064816=Peptidase_C2=FE(14.7=100)
C2:
PF0064816=Peptidase_C2=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGTTGGCTGCTGGCG
R:
ACAGCTCGTGTGATGATGCTG
Band lengths:
253-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]