MmuEX6009506 @ mm10
Exon Skipping
Gene
ENSMUSG00000054808 | Actn4
Description
actinin alpha 4 [Source:MGI Symbol;Acc:MGI:1890773]
Coordinates
chr7:28911490-28913456:-
Coord C1 exon
chr7:28913378-28913456
Coord A exon
chr7:28912240-28912321
Coord C2 exon
chr7:28911490-28911575
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTATTCCAATGCCTCCCCAGGAT
3' ss Score
8.27
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CTGGAAGGACGGGCTGGCCTTCAATGCACTCATCCACCGGCACAGGCCTGAGCTGATTGAGTATGACAAGCTGCGGAAG
Seq A exon
GATGATCCAGTCACCAACCTAAACAATGCATTTGAAGTGGCTGAGAAATACCTCGATATCCCCAAGATGTTGGATGCTGAGG
Seq C2 exon
ACATCGTGAACACAGCCCGGCCCGACGAGAAGGCCATAATGACATATGTGTCCAGCTTCTACCATGCCTTTTCAGGAGCGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054808-'37-16,'37-15,39-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(25.0=100)
A:
PF0030726=CH=FE(26.0=100)
C2:
PF0030726=CH=PD(23.1=82.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGGCTGGCCTTCAAT
R:
CTTCTGCGCTCCTGAAAAGGC
Band lengths:
159-241
Functional annotations
There are 3 annotated functions for this event
PMID: 16980305
This study isolated a novel splice variant of alpha-actinin 4 (skipping exons 3-12; ENST00000424234)... [Show more]
PMID: 22908231
ACTN4(Iso) overexpression increases transcriptional activity of the VDRE and ERE promoters. Both ACT... [Show more]
PMID: 27998979
Overexpression of either ATN4(WT) or ACTN4(Iso) increases GRE reporter activity. Disruption of the L... [Show more]
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types