MmuEX6010378 @ mm9
Exon Skipping
Gene
ENSMUSG00000030739 | Myh14
Description
myosin, heavy polypeptide 14 [Source:MGI Symbol;Acc:MGI:1919210]
Coordinates
chr7:51896431-51907941:-
Coord C1 exon
chr7:51907801-51907941
Coord A exon
chr7:51898834-51898929
Coord C2 exon
chr7:51896431-51896549
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCATCCTCTCTGCCCCACAGCCA
3' ss Score
9.16
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
CTGACCTCCTTCTGGAGCCCTGTTCCCATTATCGCTTCCTGACCAATGGGCCCTCATCGTCCCCGGGCCAGGAGCGTGAGTTATTCCAGGAGACCCTGGAGTCCCTGCGTGTGCTGGGCCTCCTCCCAGAAGAGATCACTG
Seq A exon
CCATGCTGCGCACTGTCTCTGCTGTCCTCCAGTTTGGCAACATTGTCCTGAAGAAAGAGCGCAATACGGACCAAGCCACCATGCCTGACAACACAG
Seq C2 exon
CTGCCCAGAAGCTTTGCCGCCTCTTGGGACTCGGAGTGACCGACTTCTCCAGAGCCCTTCTCACACCCCGCATCAAAGTGGGCCGAGATTATGTTCAGAAAGCACAAACCAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030739-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(4.6=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTGTTCCCATTATCGC
R:
TCTGGAGAAGTCGGTCACTCC
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: