RnoEX0057007 @ rn6
Exon Skipping
Gene
ENSRNOG00000020014 | Myh14
Description
myosin heavy chain 14 [Source:RGD Symbol;Acc:1306821]
Coordinates
chr1:100641712-100651996:-
Coord C1 exon
chr1:100651856-100651996
Coord A exon
chr1:100644560-100644655
Coord C2 exon
chr1:100641712-100641830
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCGCCCTCTGTTCCCCACAGCCA
3' ss Score
9.87
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
CTGACCTCCTTCTGGAGCCCTACTCCCATTACCGCTTCCTGACCAACGGGCCCTCATCATCCCCCGGCCAGGAGCGGGAGTTATTCCAGGAGACCCTGGAGTCCCTGCGAGTGCTGGGCCTCCTCCCAGAAGAGATCACTG
Seq A exon
CCATGCTGCGCACAGTCTCAGCTGTCCTCCAGTTTGGCAACATTGTCCTGAAGAAAGAGCGGAACACGGATCAAGCCACCATGCCTGACAACACAG
Seq C2 exon
CTGCCCAGAAGCTTTGCCGCCTCTTGGGACTTGGAGTGACTGACTTCTCCAGAGCCCTTCTCACGCCCCGCATCAAAGTCGGCCGAGATTACGTCCAGAAAGCACAGACCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020014-'11-16,'11-15,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(4.6=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCCATTACCGCTTCCTGA
R:
AGGGCTCTGGAGAAGTCAGTC
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]