HsaEX0040958 @ hg19
Exon Skipping
Gene
ENSG00000105357 | MYH14
Description
myosin, heavy chain 14, non-muscle [Source:HGNC Symbol;Acc:23212]
Coordinates
chr19:50735187-50750379:+
Coord C1 exon
chr19:50735187-50735327
Coord A exon
chr19:50747499-50747594
Coord C2 exon
chr19:50750261-50750379
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCTTGCGTCCCCAGCCA
3' ss Score
9.41
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CCGACCTCCTCCTCGAGCCCTGCTCCCACTACCGGTTCCTGACCAACGGGCCGTCATCCTCTCCCGGCCAGGAGCGGGAACTCTTCCAGGAGACGCTGGAGTCGCTGCGGGTCCTGGGATTCAGCCACGAGGAAATCATCT
Seq A exon
CCATGCTGCGGATGGTCTCAGCAGTTCTCCAGTTTGGCAACATTGCCTTGAAGAGAGAACGGAACACCGATCAAGCCACCATGCCTGACAACACAG
Seq C2 exon
CTGCACAGAAGCTCTGCCGCCTCTTGGGACTGGGGGTGACGGATTTCTCCCGAGCCTTGCTCACCCCTCGCATCAAAGTTGGCCGAGACTATGTGCAGAAAGCCCAGACTAAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105357_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.146 A=0.212 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.5=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCACTACCGGTTCCTGAC
R:
GAGCAAGGCTCGGGAGAAATC
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)