BtaEX6083723 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002580 | MYH14
Description
myosin, heavy chain 14, non-muscle [Source:HGNC Symbol;Acc:HGNC:23212]
Coordinates
chr18:56889776-56903338:+
Coord C1 exon
chr18:56889776-56889916
Coord A exon
chr18:56900953-56901048
Coord C2 exon
chr18:56903220-56903338
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTGCTGTCCCTTAGCCA
3' ss Score
7.51
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
CTGACCTGCTCCTGGAGCCCTTCTCCCACTACCGCTTCCTGACCAACGGGCCGTCTTCCTCTCCGGGCCAGGAGCGCGAGCTCTTCCAGGAGACGCTGGAGTCCCTGCGGGTCCTGGGATTCACCCATGAGGAGATCACCT
Seq A exon
CCATGCTGCGGATGGTCTCGGCCGTTCTCCAGTTTGGCAACATTGTCCTAAAGAGAGAACGGAACACCGACCAAGCCTCCATGCCCGACAACACAG
Seq C2 exon
CTGCACAGAAGCTCTGCCGCCTCCTGGGCCTGGGGGTGACGGATTTCTCCCGCGCCCTGCTCACCCCCCGCATCAAAGTTGGCCGGGACTACGTCCAGAAAGCACAGACCAAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002580-'10-13,'10-11,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.152 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.5=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCAGGAGACGCTGGAG
R:
TTGGTCTGTGCTTTCTGGACG
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]