MmuEX6014254 @ mm10
Exon Skipping
Gene
ENSMUSG00000030683 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:MGI Symbol;Acc:MGI:2385295]
Coordinates
chr7:126953385-126958454:+
Coord C1 exon
chr7:126953385-126953524
Coord A exon
chr7:126953715-126953916
Coord C2 exon
chr7:126958269-126958454
Length
202 bp
Sequences
Splice sites
3' ss Seq
CGTGTATCTGGCTTCTCTAGGTG
3' ss Score
10.03
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TTCTGTGCAATAACAACATCTCGGAGGGCGAAGGGTTTGTGGAGTCTCCGGACTTGGGGAGCACTGCCAGCCGCTCCGTGGAGCTCCTAGATTGCACCTACAGCATCCATGTCTACCCTGGTTATGGCATTGAGATTCAG
Seq A exon
GTGCAGACACTCAACCTGTCTCAGGAGGAAGAACTTCTGGTGTTGGCCGGTGGGGGTTCTCCAGGCCTGGCCCCCAGACTCCTGGCCAATTCCTCCATGCTGGGAGAAGGACAAGTGCTGCGGAGCCCAACAAACCGGCTGCTCCTGCATTTCCAGAGTCCTCGAGTCCCAAGGGGCAATGGCTTCAGGATTCACTATCAGG
Seq C2 exon
CATACCTTCTGAGCTGCGGCTTCCCACCCCGGCCAGCCCACGGGGATGTGAGCGTGACAGACTTGCATCCTGGGGGCACTGCCACCTTCCACTGTGACTCAGGATACCAGCTACAGGGTGAGGAGACCCTCATTTGCCTCAATGGTACCCGGCCAGCCTGGACTGGTGAACCCCCTAGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030683-'1-8,'1-5,4-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=0.068 C2=0.148
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(39.6=93.6)
A:
PF0043115=CUB=PD(58.6=95.6)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAGGGTTTGTGGAGTCTC
R:
TACAGCTAGGGGGTTCACCAG
Band lengths:
296-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types