MmuEX6014254 @ mm9
Exon Skipping
Gene
ENSMUSG00000030683 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:MGI Symbol;Acc:MGI:2385295]
Coordinates
chr7:134096899-134101968:+
Coord C1 exon
chr7:134096899-134097038
Coord A exon
chr7:134097229-134097430
Coord C2 exon
chr7:134101783-134101968
Length
202 bp
Sequences
Splice sites
3' ss Seq
CGTGTATCTGGCTTCTCTAGGTG
3' ss Score
10.03
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TTCTGTGCAATAACAACATCTCGGAGGGCGAAGGGTTTGTGGAGTCTCCGGACTTGGGGAGCACTGCCAGCCGCTCCGTGGAGCTCCTAGATTGCACCTACAGCATCCATGTCTACCCTGGTTATGGCATTGAGATTCAG
Seq A exon
GTGCAGACACTCAACCTGTCTCAGGAGGAAGAACTTCTGGTGTTGGCCGGTGGGGGTTCTCCAGGCCTGGCCCCCAGACTCCTGGCCAATTCCTCCATGCTGGGAGAAGGACAAGTGCTGCGGAGCCCAACAAACCGGCTGCTCCTGCATTTCCAGAGTCCTCGAGTCCCAAGGGGCAATGGCTTCAGGATTCACTATCAGG
Seq C2 exon
CATACCTTCTGAGCTGCGGCTTCCCACCCCGGCCAGCCCACGGGGATGTGAGCGTGACAGACTTGCATCCTGGGGGCACTGCCACCTTCCACTGTGACTCAGGATACCAGCTACAGGGTGAGGAGACCCTCATTTGCCTCAATGGTACCCGGCCAGCCTGGACTGGTGAACCCCCTAGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030683-'8-15,'8-13,9-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=0.074 C2=0.143
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(39.6=93.6)
A:
PF0043115=CUB=PD(58.6=95.6)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAGGGTTTGTGGAGTCTC
R:
TACAGCTAGGGGGTTCACCAG
Band lengths:
296-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: