DreEX6015595 @ danRer10
Exon Skipping
Gene
ENSDARG00000076052 | sez6l2
Description
seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
Coordinates
chr3:15108519-15109335:-
Coord C1 exon
chr3:15109199-15109335
Coord A exon
chr3:15108821-15109013
Coord C2 exon
chr3:15108519-15108704
Length
193 bp
Sequences
Splice sites
3' ss Seq
ATCACCCATCTGTCTTGAAGGTG
3' ss Score
7.96
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTCAGTGCAATGCCAGTCTGTCAGGAATGGAGGGAATAATCGAGTCTCCTGATCCGCTCTCATCCTCGTCTGCCTTTTCCCCACTGGAGTGCACCTACAGCATCACCGTCTATCCTGGATATGGCGTTGAGATACAG
Seq A exon
GTGAAGAAAGTAAACTTGTCCAAAGAGGAGTCCCTCACCATTTCGGATCTGGGTGGTGCAGCACTTGAGGTTTTGGCCAATGAGACGCTGATGAGCGAAGGTCAGGTGATTCGTAGCACAACCAATCAAGTGCAGATCCATTATAAGAGCCTGAAGCAAAACAATCATGGCGTTTTCAGCTTTCACTATCAAG
Seq C2 exon
CCTTCCTCCTGTCCTGTTCGTTCCCTCTCTCCCCTGAGGGCGGCGGAGTGACTGTAACTGATATACATCCTGGCGGTCAGGCTCACTTTCATTGTGATCCAGGGTTTGAGGTCAGAGGTCATGAGGTTGCAACCTGTTTAAACTCTACCCGACCCAAATGGAGCACTCCAGAGCCCCAGTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076052-'8-7,'8-5,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(40.2=93.5)
A:
PF0043115=CUB=PD(57.9=95.4)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGCCAGTCTGTCAGGAA
R:
CCTCTGACCTCAAACCCTGGA
Band lengths:
249-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]