RnoEX6004979 @ rn6
Exon Skipping
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198386422-198391469:+
Coord C1 exon
chr1:198386422-198386561
Coord A exon
chr1:198386754-198386955
Coord C2 exon
chr1:198391284-198391469
Length
202 bp
Sequences
Splice sites
3' ss Seq
CCTGTATCTGGCTTCTCTAGGTG
3' ss Score
10.26
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TTCTGTGCAATAACAACATCTCCGAGGGCGAAGGGTTTGTGGAATCTCCAGACTTGGGGAGCACTGCCAGCCGCTCTGTGGAGCTCCTAGATTGCACCTACAGCATCCACGTCTACCCTGGTTATGGCATTGAGATTCAG
Seq A exon
GTGCAGACACTCAACCTCTCTCAGGAGGAGGAGCTCCTGGTGCTGGCTGGTGGGGGCTCTCCAGGCCTGGCCCCCAGACTCCTGGCTAATTCCTCCATGCTGGGAGAAGGACAAGTGCTTCGGAGTCCAACAAACCGGCTGCTCCTGCATTTCCAGAGTCCTCGAGTCCCAAGGGGCAATGGCTTCAGGATTCACTATCAGG
Seq C2 exon
CATACCTTCTGAGCTGTGGCTTCCCACCCCGGCCAGCCCATGGGGACGTGAGTGTGACAGACTTGCATCCTGGGGGCACCGCCACCTTCCACTGTGACTCAGGATACCAGCTGCAGGGTGAGGAGACCCTCATCTGCCTCAATGGCACCCGGCCAGCCTGGACTGGTGAACCCCCTAGCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=0.074 C2=0.143
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(39.6=93.6)
A:
PF0043115=CUB=PD(58.6=95.6)
C2:
PF0008415=Sushi=WD(100=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAAGGGTTTGTGGAATCT
R:
CTAGGGGGTTCACCAGTCCAG
Band lengths:
292-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]