MmuEX6020162 @ mm9
Exon Skipping
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:116438407-116442712:+
Coord C1 exon
chr5:116438407-116438542
Coord A exon
chr5:116440337-116440476
Coord C2 exon
chr5:116442620-116442712
Length
140 bp
Sequences
Splice sites
3' ss Seq
AGCTGCTCCTTTCCTCTCAGGGG
3' ss Score
8.5
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTAGTGCTGGTGGGCACGGAGGAAGGCCTCTACGCCCTGAATGTCTTGAAAAACTCCTTAACCCACATCCCAGGGATTGGCGCAGTCTTCCAAATTTACATCATCAAGGACCTGGAGAAGCTGCTCATGATAGCAG
Seq A exon
GGGAAGAGCGGGCTCTGTGCCTGGTGGACGTGAAGAAGGTGAAGCAGTCCCTGGCGCAGTCACACCTGCCTGCCCAGCCCGACGTCTCCCCCAACATATTCGAAGCCGTCAAAGGCTGCCACTTGTTCGCTGCTGGCAAG
Seq C2 exon
ATCGAGAACAGCCTGTGCATCTGCGCCGCTATGCCAAGCAAAGTCGTCATCCTCCGCTACAATGACAACCTCAGCAAGTACTGCATCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516-'56-58,'56-57,57-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(16.2=100)
A:
PF0078017=CNH=FE(16.5=100)
C2:
PF0078017=CNH=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGGCACGGAGGAAG
R:
CAGTACTTGCTGAGGTTGTCA
Band lengths:
213-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: