RnoEX6064798 @ rn6
Exon Skipping
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46346742-46351977:-
Coord C1 exon
chr12:46351842-46351977
Coord A exon
chr12:46349905-46350044
Coord C2 exon
chr12:46346742-46346834
Length
140 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTCCTTTCCTCTCAGGGG
3' ss Score
9.69
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GTGGTGCTGGTGGGCACCGAGGAGGGCCTCTATGCGCTGAACGTCTTGAAAAACTCCTTAACCCACATCCCAGGAATCGGAGCAGTCTTCCAGATTTACATCATCAAGGACCTGGAGAAGCTGCTCATGATAGCAG
Seq A exon
GGGAAGAGCGGGCTCTGTGTTTGGTGGACGTGAAGAAGGTGAAGCAGTCGTTGGCACAGTCACACCTTCCTGCCCAGCCTGACGTCTCCCCCAACATATTTGAAGCCGTCAAAGGCTGCCACCTGTTTGCTGCTGGCAAG
Seq C2 exon
ATCGAGAACAGCCTCTGCATCTGTGCCGCCATGCCGAGCAAAGTCGTCATCCTGCGCTACAACGACAACCTCAGCAAGTTCTGCATCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143-'70-68,'70-67,71-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(16.2=100)
A:
PF0078017=CNH=FE(16.5=100)
C2:
PF0078017=CNH=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTATGCGCTGAACGTC
R:
CAGAACTTGCTGAGGTTGTCGT
Band lengths:
194-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]