GgaEX6014267 @ galGal3
Exon Skipping
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9894555-9896439:+
Coord C1 exon
chr15:9894555-9894690
Coord A exon
chr15:9895358-9895497
Coord C2 exon
chr15:9896347-9896439
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTAACCATTTTTGTCTGCAGGAG
3' ss Score
8.48
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTTGTACTGGTGGGTGCAGAAGAAGGTCTCTATGCCCTGAATGTATTAAAGAACTCCTTAACGCACATCCCAGGAGTGGGTGCTGTGTTCCAAATTCACCTCATCAAGGATCTGGAGAAGCTACTCATGATAGCAG
Seq A exon
GAGAAGAAAGGGCTTTGTGTCTTGTTGATGTAAAAAAGGTGAAGCAATCTCTAGCCCAGTCTCACCTTCCGGCCCAGCCTGATATCTCACCAAACGTTTTTGAAGCTGTCAAAGGATGTCATCTTTTTGCTGCTGGCAAG
Seq C2 exon
GTTGAGAATGGTCTTTGCATCTGTGCAGCCATGCCCAATAAAGTGGTTGTTCTGCGATACAATGAGAGCTTGAGCAAGTTCTGTATCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-'51-53,'51-52,52-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(16.1=100)
A:
PF0078017=CNH=FE(16.4=100)
C2:
PF0078017=CNH=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTACTGGTGGGTGCAGAA
R:
TCTGATACAGAACTTGCTCAAGCT
Band lengths:
226-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]