DreEX0002780 @ danRer10
Exon Skipping
Gene
ENSDARG00000089856 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr5:2150067-2153464:-
Coord C1 exon
chr5:2153329-2153464
Coord A exon
chr5:2152938-2153077
Coord C2 exon
chr5:2150067-2150159
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGTCAGGTA
3' ss Score
10.62
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
ATCGTGCTGGTGGGCTCAGAGGAGGGTCTGTACGCTCTGAACGTCATCAAGAACTCGCTCACACACATCCCGGGTCTGGACTCTGTGTTCCAGATACAGATCCTGAAAGAGCTGGACAAGCTGCTCATGATCACCG
Seq A exon
GTAAGGAGCGTGCTCTGTGTCTGGTGGAGATTAAGCGGGTGAAGCAGTCTCTGGCTCAGTCTCATCTGCCGGCTCAGCCTGATCTCAGCCCCTACATCTTCGAGGCGGTGAAGGGCTGCCATCTCTTCGCTTCCGGAAAG
Seq C2 exon
ATCGACACAGGCATGTGTATCTGTGCTGCGATGCCCAATAAAATCACCATCCTGCGCTTCAATGACACACTCAACAAGTTCTGCATCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089856-'50-57,'50-55,51-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(16.2=100)
A:
PF0078017=CNH=FE(16.5=100)
C2:
PF0078017=CNH=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTGCTGGTGGGCTCAG
R:
TCTGATGCAGAACTTGTTGAGTGT
Band lengths:
226-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]