MmuEX6020743 @ mm9
Exon Skipping
Gene
ENSMUSG00000029475 | Kdm2b
Description
lysine (K)-specific demethylase 2B [Source:MGI Symbol;Acc:MGI:1354737]
Coordinates
chr5:123384742-123397889:-
Coord C1 exon
chr5:123397736-123397889
Coord A exon
chr5:123390962-123391077
Coord C2 exon
chr5:123384742-123384868
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCCCTCCCCACTCAGGTT
3' ss Score
10.71
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
ATCTTTTGGCTGATCCCTCCAACCCTGCACAACTTGGCTTTGTACGAGGAGTGGGTGCTGTCTGGCAAACAGAGCGACATCTTTCTGGGAGACCGCGTGGAACGCTGCCAAAGAATTGAGCTGAAGCAAGGCTACACCTTTTTCATCCCTTCCG
Seq A exon
GTTGGATCCATGCGGTTTATACGCCTGTGGACTCTCTGGTGTTCGGCGGGAACATCCTGCATAGCTTCAACGTGCCCATGCAGCTGCGGATCTACGAGATCGAGGACAGGACCCGG
Seq C2 exon
GTTCAGCCCAAGTTCCGTTACCCCTTCTACTATGAGATGTGCTGGTATGTCTTGGAGAGATATGTGTACTGTGTGACCCAGCGCTCCTACCTCACTCAGGAATACCAGAGAGAATTAATGCTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029475-'20-19,'20-17,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=FE(25.2=100)
A:
PF136211=Cupin_8=PD(12.9=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGCTGATCCCTCCAACC
R:
TTCCTGAGTGAGGTAGGAGCG
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: