GgaEX0005614 @ galGal3
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
NA
Coordinates
chr15:5574668-5591421:-
Coord C1 exon
chr15:5591268-5591421
Coord A exon
chr15:5580053-5580168
Coord C2 exon
chr15:5574668-5574794
Length
116 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCTTTCCCTCTCTAGGGT
3' ss Score
12.57
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATCTTCTGGCTGATTCCACCTACTCTGCAGAATCTAGAACTTTATGAAGAATGGGTTCTCTCAGGAAAGCAAAGTGATATCTTTCTGGGAGACAGAGTGGAACGATGCCAAAGAATTGAACTGAAACAAGGCTATACATTCTTCATTCCTTCAG
Seq A exon
GGTGGATACATGCGGTTTATACTCCAGTAGATTCTCTGGTGTTTGGTGGAAATATCCTGCATAGCTTTAATGTTCCCATGCAGCTTCGCATCTATGAAATTGAGGACAGAACAAGG
Seq C2 exon
GTGCATGCCAAATTCCGTTATCCTTTCTACTATGAAATGTGCTGGTATGTTCTGGAGAGATACGTGTCCTGTGTGACCCAGCGCTGCCACCTCAGCAAAGAGTACCAGAAAGAATCAATGTTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225_MULTIEX2-1/4=C1-3
Average complexity
C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=FE(16.6=100)
A:
PF136211=Cupin_8=FE(12.3=100)
C2:
PF136211=Cupin_8=PD(3.6=25.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGATTCCACCTACTCTGC
R:
GGTACTCTTTGCTGAGGTGGC
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]