RnoEX6064439 @ rn6
Exon Skipping
Gene
ENSRNOG00000025702 | Kdm2b
Description
lysine demethylase 2B [Source:RGD Symbol;Acc:1310217]
Coordinates
chr12:39078119-39090789:+
Coord C1 exon
chr12:39078119-39078275
Coord A exon
chr12:39084701-39084816
Coord C2 exon
chr12:39090663-39090789
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTTGCCCTCCCTCAGGTT
3' ss Score
11.32
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAGATCTTTTGGCTGATCCCCCCAACCCTGCACAACTTGGCTCTGTATGAGGAGTGGGTGCTGTCTGGCAAACAGAGTGACATCTTTCTGGGAGACCGAGTGGAACGCTGCCAAAGAATTGAGCTGAAGCAAGGCTACACATTTTTCATCCCTTCTG
Seq A exon
GTTGGATCCATGCAGTGTACACGCCCGTGGACTCTCTGGTGTTCGGCGGGAACATCCTGCACAGCTTCAACGTGCCCATGCAGCTGCGCATCTACGAGATCGAGGACAGGACCCGG
Seq C2 exon
GTTCAGCCCAAGTTCCGTTACCCCTTCTACTATGAGATGTGCTGGTATGTCTTGGAGAGATACGTGTACTGTGTGACCCAGCGCTCCTACCTCACTCAGGAATACCAGCGAGAATTAATGCTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025702-'3-9,'3-3,4-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=PU(64.2=98.1)
A:
PF136211=Cupin_8=PD(34.6=71.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTTTTGGCTGATCCCCC
R:
TTCCTGAGTGAGGTAGGAGCG
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]