BtaEX0018971 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002328 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr17:55938894-55953078:+
Coord C1 exon
chr17:55938894-55939047
Coord A exon
chr17:55947223-55947338
Coord C2 exon
chr17:55952952-55953078
Length
116 bp
Sequences
Splice sites
3' ss Seq
CGTGCCCTTCCCCACCCCAGGCT
3' ss Score
8.75
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
ATTTTTTGGCTGATTCCTCCAACCTTGCACAATTTGGCACTGTATGAGGAGTGGGTGCTGTCAGGCAAACAGAGCGACATCTTCCTGGGAGACCGCGTGGAGCGATGCCAAAGAATTGAGCTGAAACAGGGTTACACGTTTTTCATCCCTTCCG
Seq A exon
GCTGGATCCATGCAGTCTACACTCCCGTAGACTCTCTGGTGTTCGGCGGGAACATCCTGCACAGCTTCAACGTGCCCATGCAGCTGCGGATCTACGAGATCGAGGACAGAACGCGG
Seq C2 exon
GTGCAGCCCAAATTCCGTTACCCCTTCTACTATGAGATGTGCTGGTATGTCTTGGAGAGATACGTGTACTGTATGACCCAGCGGTCCTACCTCACTCAGGAATACCAGAGAGAATCAATGCTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002328-'26-14,'26-10,27-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=FE(23.8=100)
A:
PF136211=Cupin_8=PD(12.1=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATTCCTCCAACCTTGCA
R:
TTCCTGAGTGAGGTAGGACCG
Band lengths:
248-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development