DreEX6089625 @ danRer10
Exon Skipping
Gene
ENSDARG00000046010 | kdm2bb
Description
lysine (K)-specific demethylase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080225-13]
Coordinates
chr10:42037785-42051149:-
Coord C1 exon
chr10:42050996-42051149
Coord A exon
chr10:42046457-42046572
Coord C2 exon
chr10:42037785-42037902
Length
116 bp
Sequences
Splice sites
3' ss Seq
TCTCGTATGTGTTTCTGTAGGCT
3' ss Score
8.99
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTCTTCTGGCTGATTCCTCCAAACGCACATAACCTGTCTCTGTATGAGGACTGGGTTTTGTCAGGCAAACAGAGCGACATCTTTCTGGGTGACCGAGCAGACGGATGCCAGAGAGTCGAGCTGAAGCAGGGATACACCTTCTTCATCCCATCAG
Seq A exon
GCTGGATTCATGCCGTCTACACTCCAGAGGACACCCTGGTGTTTGGCGGGAATATTCTCCACAGTTTTAACATTCCCATGCAGCTCACTGTCTACGAAATTGAGAACAGAACAAAG
Seq C2 exon
GTGCACTCCAAATTCCGCTACCCGTTCTTCTATGAGATGTGCTGGTATGTGCTGGAGAGATACGTCAGCTGCTTGACCAAACGTTCGCATCTCAGCCTCGAGTTTCGCAATCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000046010-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=FE(22.0=100)
A:
PF136211=Cupin_8=PD(12.5=74.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATTCCTCCAAACGCACA
R:
GATTGCGAAACTCGAGGCTGA
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]