MmuEX6024518 @ mm9
Exon Skipping
Gene
ENSMUSG00000026034 | Clk1
Description
CDC-like kinase 1 [Source:MGI Symbol;Acc:MGI:107403]
Coordinates
chr1:58471216-58474023:-
Coord C1 exon
chr1:58473857-58474023
Coord A exon
chr1:58471434-58471528
Coord C2 exon
chr1:58471216-58471345
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATTATGTGTACTTTCTCCAGTTT
3' ss Score
6.16
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CCGTTGTGTCCAGATGTTGGAGTGGTTTGAGCATCGAGGTCACATTTGCATTGTGTTTGAACTTCTGGGGCTTAGTACTTATGATTTCATTAAGGAAAACAGTTTTCTGCCGTTTCGAATGGATCATATCAGGAAGATGGCATATCAAATATGCAAATCTGTAAACT
Seq A exon
TTTTGCATAGTAATAAATTGACTCATACAGACTTGAAGCCTGAAAACATCTTATTTGTGAAGTCTGACTACACAGAGGCTTATAATCCCAAAATG
Seq C2 exon
AAACGTGATGAACGTACTATAGTAAATCCAGATATTAAAGTGGTGGACTTTGGAAGTGCAACATATGATGATGAACACCACAGCACATTGGTATCTACAAGACATTATAGAGCACCGGAAGTTATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026034-'8-13,'8-11,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.011
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.7=100)
A:
PF0006920=Pkinase=FE(9.8=100)
C2:
PF0006920=Pkinase=PU(24.7=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTTGAACTTCTGGGGCT
R:
TGCACTTCCAAAGTCCACCAC
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: