GgaEX7005855 @ galGal4
Exon Skipping
Gene
ENSGALG00000028438 | CLK1
Description
CDC-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr7:10799320-10799889:-
Coord C1 exon
chr7:10799723-10799889
Coord A exon
chr7:10799535-10799629
Coord C2 exon
chr7:10799320-10799449
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTGTCACCTTGCAGTTT
3' ss Score
8.6
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TCGCTGTGTCCAAATGTTGGAATGGTTTGAGCATCACGGCCATGTCTGCATTGTTTTTGAGCTGCTGGGACTCAGTACCTATGACTTCATTAAAGAGAACGGCTTTTTGCCATTTCGGTTGGACCACATTAGACAGATGGCGTATCAGATTTGCAAATCTGTGAACT
Seq A exon
TTTTACATTTAAACAAACTGACACATACAGACCTGAAACCGGAAAACATTTTATTTGTCCAGTCTGATTATGTAGAGGAGTACAACCCCAGACTG
Seq C2 exon
AAACGTGATGAGCGCACACTAAAAAATCCGGACATCAAAGTGGTGGATTTTGGCAGTGCAACATACGATGACGAGCATCACAGCACTCTGGTGTCAACGAGACATTACAGGGCTCCTGAAGTTATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028438-'10-8,'10-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.7=100)
A:
PF0006920=Pkinase=FE(9.8=100)
C2:
PF0006920=Pkinase=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGGACTCAGTACCTA
R:
GTTGCACTGCCAAAATCCACC
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]