BtaEX0009258 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005408 | CLK1
Description
CDC-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr2:89922359-89923333:-
Coord C1 exon
chr2:89923167-89923333
Coord A exon
chr2:89922572-89922666
Coord C2 exon
chr2:89922359-89922488
Length
95 bp
Sequences
Splice sites
3' ss Seq
AGGAACTTTTCTGTTTTCAGTTT
3' ss Score
7.23
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CCGCTGTGTCCAGATGTTGGAGTGGTTTGAGCATCATGGTCATGTCTGCATTGTGTTTGAACTATTGGGACTTAGTACTTATGACTTTATTAAGGAAAATGGTTTTCTGCCCTTTCGACTGGATCATATCAGGAGGATGGCATACCAGATATGCAAGTCTGTGAACT
Seq A exon
TTTTGCACAGTAATAAGTTGACTCACACAGACTTAAAACCTGAAAACATCTTATTTGTACAGTCTGACTACACAGAGGCATATAATCCCAAAATG
Seq C2 exon
AAACGTGATGAACGTACTTTAATAAATCCAGATATTAAAGTTGTAGACTTCGGAAGTGCAACATATGATGATGAACATCACAGTACATTGGTATCTACAAGACATTATAGGGCACCTGAAGTTATATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005408_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.7=100)
A:
PF0006920=Pkinase=FE(9.8=100)
C2:
PF0006920=Pkinase=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCCTTTCGACTGGATCA
R:
TCAGGTGCCCTATAATGTCTTGT
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development