RnoEX0021822 @ rn6
Exon Skipping
Gene
ENSRNOG00000025768 | Clk1
Description
CDC-like kinase 1 [Source:RGD Symbol;Acc:1311469]
Coordinates
chr9:65299211-65301911:-
Coord C1 exon
chr9:65301745-65301911
Coord A exon
chr9:65299430-65299524
Coord C2 exon
chr9:65299211-65299340
Length
95 bp
Sequences
Splice sites
3' ss Seq
AACTATGTACTTCTTTCCAGTTT
3' ss Score
7.06
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CCGTTGTGTCCAGATGTTGGAATGGTTTGAGCACCGAGGTCACATTTGCATTGTGTTTGAACTTCTGGGGCTTAGTACTTACGATTTCATTAAGGAAAACAGCTTTCTGCCGTTTCGAATGGATCATATCAGGAAGATGGCATATCAAATATGCAAATCTGTAAACT
Seq A exon
TTTTGCATAGTAATAAATTGACTCACACAGACTTGAAGCCTGAAAACATCTTATTTGTGAAGTCTGACTACACAGAGGCTTATAATCCCAAAATG
Seq C2 exon
AAACGTGATGAACGCACTATAGTAAATCCCGATATTAAAGTGGTGGACTTTGGGAGTGCAACATATGATGACGAACATCACAGCACATTGGTATCTACAAGACATTACAGAGCACCAGAAGTCATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025768-'14-16,'14-13,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(17.7=100)
A:
PF0006920=Pkinase=FE(9.8=100)
C2:
PF0006920=Pkinase=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTTGAACTTCTGGGGCT
R:
TGTTGCACTCCCAAAGTCCAC
Band lengths:
179-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]