MmuEX6025153 @ mm10
Exon Skipping
Gene
ENSMUSG00000026193 | Fn1
Description
fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
Coordinates
chr1:71629316-71632162:-
Coord C1 exon
chr1:71632041-71632162
Coord A exon
chr1:71629666-71629843
Coord C2 exon
chr1:71629316-71629492
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTTACATATTCAGAAA
3' ss Score
8.61
5' ss Seq
CCAGTACGT
5' ss Score
7.19
Exon sequences
Seq C1 exon
GCACAACTGGACCTGTCCAAGTAATTATCACGGAGACCCCCAGCCAGCCCAATTCCCACCCCATCCAGTGGAATGCCCCGGAGCCTTCACACATCACCAAGTACATTCTCAGATGGAGACCT
Seq A exon
AAAACCTCTACGGGTCGCTGGAAGGAAGCTACCATTCCTGGCCACCTTAACTCCTATACCATCAAAGGCCTGACCCCAGGTGTGATCTATGAGGGACAGCTCATCAGCATCCAGCAGTATGGCCACAGAGAAGTGACACGCTTCGACTTCACCACCAGCGCCAGCACCCCTGTGACCA
Seq C2 exon
GCAACACGGTGACCGGAGAGACTGCGCCCTACTCTCCTGTTGTGGCCACTTCTGAATCTGTAACTGAAATCACAGCCAGCAGCTTTGTGGTCTCATGGGTCTCAGCCTCCGACACCGTGTCAGGCTTCCGGGTGGAGTATGAGCTGAGCGAGGAGGGAGATGAACCACAGTACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026193-'31-28,'31-26,33-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=0.117 C2=0.450
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(45.1=90.2)
A:
PF0004116=fn3=PD(52.4=71.7)
C2:
PF0004116=fn3=PU(56.8=76.7)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTCCCACCCCATCCAGTG
R:
TGTGGTTCATCTCCCTCCTCG
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types