GgaEX6041542 @ galGal4
Exon Skipping
Gene
ENSGALG00000003578 | fn1
Description
fibronectin precursor [Source:RefSeq peptide;Acc:NP_001185641]
Coordinates
chr7:4364511-4366304:-
Coord C1 exon
chr7:4366183-4366304
Coord A exon
chr7:4364821-4364998
Coord C2 exon
chr7:4364511-4364687
Length
178 bp
Sequences
Splice sites
3' ss Seq
AAGTATCCTTGTTCTTGCAGAAA
3' ss Score
8.4
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GGGCAACTGGACCTGTTCAAGTGATCATTACAGAGAGTACGAATCAGCCAAACTCCCACCCCATCCAGTGGAACGCTCCCAAAACATCTCACATCAGCAAGTACATTCTGCGCTGGAGACCG
Seq A exon
AAAATCTCTGGAAGGCACTGGAAGGAAGCTACCATCCCTGGTCACCTGAACTCCTACACCATCTCAGGCCTGAAGCCTGGTGTAGTGTATGAAGGACAGCTTATCAGTGTTCAGCAGCATGGACCCAAAGAAGTCACACGCTTTGATTTTACCACAACTAGCACTACAGCAGTAACAA
Seq C2 exon
GCAACACTGTTTCAGGAGAGACAACTCTTCTTCCTCCCATGGTTGCTACTTCAGAGTCAGTCACTGAAATCACAGCCAGCAGCTTTGTTGTCTCCTGGGTTTCTGCTTCTGACACAGTTTCTGGATTCCGTGTTGAGTATGAACTGAGCGAGGAGGGTGATGAGCCACAGTATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003578-'15-16,'15-14,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.183 C2=0.433
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(44.6=90.2)
A:
PF0004116=fn3=PD(53.0=73.3)
C2:
PF0004116=fn3=PU(56.2=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATCAGCCAAACTCCCAC
R:
TACTGTGGCTCATCACCCTCC
Band lengths:
256-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]