RnoEX6040252 @ rn6
Exon Skipping
Gene
ENSRNOG00000014288 | Fn1
Description
fibronectin 1 [Source:RGD Symbol;Acc:2624]
Coordinates
chr9:78944816-78947935:-
Coord C1 exon
chr9:78947814-78947935
Coord A exon
chr9:78945167-78945344
Coord C2 exon
chr9:78944816-78944992
Length
178 bp
Sequences
Splice sites
3' ss Seq
GCTTTCCTTTATATTTTCAGAAA
3' ss Score
8.69
5' ss Seq
CCAGTACGT
5' ss Score
7.19
Exon sequences
Seq C1 exon
GCACAACTGGACCTGTTCAAGTAATTATCACGGAGACCCCCAGCCAGCCCAATTCCCACCCCATCCAGTGGAATGCCCCGGAGCCTTCACACATCACCAAGTACATTCTCAGGTGGAGACCT
Seq A exon
AAAACCTCTACGGGTCGCTGGAAGGAAGCTACCATTCCAGGCCACCTTAACTCCTATACCATCAAAGGCCTGACCCCAGGTGTGATCTACGAGGGACAGCTCATCAGCATCCAGCAGTACGGGCACCAAGAAGTGACTCGCTTTGACTTCACCACCAGCGCCAGCACACCTGTGACCA
Seq C2 exon
GCAACACAGTGACTGGAGAGACTGCGCCCTTTTCTCCTGTTGTGGCCACTTCCGAATCTGTCACTGAAATCACAGCCAGCAGCTTCGTGGTCTCCTGGGTCTCAGCTTCCGACACGGTGTCAGGATTCCGAGTGGAGTACGAACTGAGCGAGGAAGGAGATGAGCCTCAGTACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014288-'19-24,'19-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=0.117 C2=0.433
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(45.1=90.2)
A:
PF0004116=fn3=PD(52.4=71.7)
C2:
PF0004116=fn3=PU(56.8=76.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTCCCACCCCATCCAGTG
R:
TGAGGCTCATCTCCTTCCTCG
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]