BtaEX0014830 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008300 | FN1
Description
Bos taurus fibronectin 1 (FN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001163778]
Coordinates
chr2:103924331-103928113:-
Coord C1 exon
chr2:103927992-103928113
Coord A exon
chr2:103924985-103925165
Coord C2 exon
chr2:103924331-103924507
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTTTTCACTTAAATTTTTAGAAA
3' ss Score
8.62
5' ss Seq
CCAGTATGT
5' ss Score
5.8
Exon sequences
Seq C1 exon
ATACAAGTGGTCCTGTCCAAGTAATCATCACTGAGACCCCAAGTCAACCCAACTCTCACCCCATCCAATGGAGCGCACCAGAATCATCTCACATTTCCAAGTACATTCTCAGATGGAAACCT
Seq A exon
AAAAATTCTCCAAACCGCTGGAAGGAAGCTACCATTCCTGGCCACTTAAACTCCTACACCATCAAAGGCCTGAGGCCAGGTGTGGTATACGAGGGCCAGCTTATCAGCGTCCAGCACTATGGCCAAAGAGAGGTGACGCGCTTCGACTTTACCACCACCAGCACGAGCCCAGCGGTGACCA
Seq C2 exon
GCAACACTGTGACGGGAGAGACCACACCCTTGTCTCCTGTTGTGGCCACCTCTGAGTCGGTGACTGAAATCACAGCCAGCAGCTTTGTGGTTTCCTGGGTCTCGGCTTCGGACACTGTGTCTGGATTCCGGGTGGAGTATGAGCTGAGTGAAGAGGGAGATGAACCACAGTACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008300-'15-17,'15-16,16-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=0.262 C2=0.500
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(45.2=92.7)
A:
PF0004116=fn3=PD(52.4=72.1)
C2:
PF0004116=fn3=PU(56.8=76.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCAAGTCAACCCAACTC
R:
TCTCCCTCTTCACTCAGCTCA
Band lengths:
248-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development