MmuEX6028114 @ mm9
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:152478297-152480876:-
Coord C1 exon
chr1:152480740-152480876
Coord A exon
chr1:152479536-152479677
Coord C2 exon
chr1:152478297-152478441
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCTTTTTGAATCCAGGCA
3' ss Score
6.68
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TGCCTCCTAATATTGCTGGCATGGATGAAGCCCAGGACTTCACTGTGTTAAGGAACAGGCAGGTGACACTGGAATGCAAATCCGATGCGGTGCCTCCACCTGTGATCATGTGGCTCAAAAACAGGGAGCAGTTACAG
Seq A exon
GCAACACCTCGAGTAAGAATCCTGTCTGGGGGCAGATACTTACAAATCAATAATGCAGACCTGGGAGACACAGCCAATTACACCTGTGTTGCCAGCAACATCGCGGGAAAGACTACAAGAGAATTTAACCTCACTGTAAATG
Seq C2 exon
TTCCTCCAAGCATCGGTGGCGGTCCCCAGAGCCTTGTCACTCTCTTAAATAAGTCAATCGCCCTGGAATGCCGTGCTGAAGGCGTGCCAGCACCGAGGATAACGTGGAGAAAGGATGGCGTTGTGCTAGCTGAGAGCCATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842-'73-72,'73-71,74-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.020
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(44.7=82.6)
A:
PF0767911=I-set=PD(52.9=93.8)
C2:
PF0767911=I-set=PU(52.3=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAAGCCCAGGACTTCA
R:
AGCACAACGCCATCCTTTCTC
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: