RnoEX6044643 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:67977173-67979951:-
Coord C1 exon
chr13:67979815-67979951
Coord A exon
chr13:67978569-67978710
Coord C2 exon
chr13:67977173-67977317
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGATTTTACTCTGAATCCAGGCA
3' ss Score
4.6
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TGCCTCCTAACATTGCTGGAGTGGATGAAGCCCAGGACTTCACCGTGTTAAGGAACAGGCAGGTGACATTGGAATGCAAGTCCGACGCAGTGCCTCCACCTGTGATCATGTGGCTCAAAAATGGGGAGCAGTTACAG
Seq A exon
GCAACACCTCGAGTAAGAATCCTGTCTGGAGGCAGATACTTGCAAATTAATAATGCAGACCTGGGAGACACGGCCAATTATACCTGTGTCGCCAGCAACATCGCAGGAAAGACTACAAGAGAATTTATCCTCACTGTAAATG
Seq C2 exon
TTCCTCCAAGCATCAGTGGTGGTCCCCAGAGCCTTGTCACTCTCTTAAATAAGTCAATTGCCCTGGAATGCCTTGCTGAAGGCGTGCCATCACCCAGGATAACATGGAGAAAGGACGGTGTTGTTCTAGCTGAGAGCCATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'85-85,'85-84,86-85=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(44.7=82.6)
A:
PF0767911=I-set=PD(52.9=93.8)
C2:
PF0767911=I-set=PU(52.3=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAAGCCCAGGACTTCA
R:
GCATGGCTCTCAGCTAGAACA
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]