MmuEX6029822 @ mm9
Exon Skipping
Gene
ENSMUSG00000038599 | Capn8
Description
calpain 8 [Source:MGI Symbol;Acc:MGI:2181366]
Coordinates
chr1:184537725-184543668:+
Coord C1 exon
chr1:184537725-184537900
Coord A exon
chr1:184541220-184541231
Coord C2 exon
chr1:184543457-184543668
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTTGCCATGCAGATT
3' ss Score
9.59
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
CCACTTACTGGACCAACCCCCAGTTTAAAATCCATTTGGACGAGGTGGATGAGGACCAGGAGGAGGGCACCAGTGAACCCTGCTGTACAGTGCTGCTGGGTCTGATGCAGAAGAATCGCAGACGTCAGAGGAGGATCGGCCAGGGCATGCTCAGCATAGGCTATGCTGTCTACCAG
Seq A exon
ATTCCCAAGGAG
Seq C2 exon
CTGGAGAATCACACCGATGAGCACCTGGGCCGGGATTTCTTCCAGGGCCGCCAGCCCTCCACCTGCTCCAGCACCTACATGAACCTTCGAGAGGTGTCCAGCAGGGTCCAACTCCCCCCAGGACAGTACCTGGTGGTGCCATCCACCTTTGAGCCCTTCAAGGACGGTGACTTCTGCCTGAGGGTGTTCTCGGAGAAGAAGGCCCAGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038599-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.141
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(36.7=100)
A:
PF0106717=Calpain_III=FE(1.9=100)
C2:
PF0106717=Calpain_III=FE(44.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAATCGCAGACGTCA
R:
CAGGTGCTCATCGGTGTGATT
Band lengths:
97-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: