HsaEX1006953 @ hg38
Exon Skipping
Gene
ENSG00000203697 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr1:223609153-223616145:-
Coord C1 exon
chr1:223615970-223616145
Coord A exon
chr1:223612246-223612257
Coord C2 exon
chr1:223609153-223609364
Length
12 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTCTGCCCCACAGGTT
3' ss Score
11.87
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CCACGTACTGGACCAATCCCCAGTTCAAAATCCGTTTGGATGAAGTGGATGAGGACCAGGAGGAGAGCATCGGTGAACCCTGCTGTACAGTGCTGCTGGGCCTGATGCAGAAAAATCGCAGGTGGCGGAAGCGGATAGGACAAGGCATGCTTAGCATCGGCTATGCCGTCTACCAG
Seq A exon
GTTCCCAAGGAG
Seq C2 exon
CTGGAGAGTCACACGGACGCACACTTGGGCCGGGATTTCTTCCTGGCCTACCAGCCCTCAGCCCGCACCAGCACCTACGTCAACCTGCGGGAGGTCTCTGGCCGGGCCCGGCTGCCCCCTGGGGAGTACCTGGTGGTGCCATCCACATTTGAACCCTTCAAAGACGGCGAGTTCTGCTTGAGAGTGTTCTCAGAGAAGAAGGCCCAGGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203697_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(36.7=100)
A:
PF0106717=Calpain_III=FE(1.9=100)
C2:
PF0106717=Calpain_III=FE(44.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCGGATAGGACAAGGCA
R:
GAAGAAATCCCGGCCCAAGTG
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains