RnoEX0016750 @ rn6
Exon Skipping
Gene
ENSRNOG00000003468 | Capn8
Description
calpain 8 [Source:RGD Symbol;Acc:620085]
Coordinates
chr13:101021866-101028615:+
Coord C1 exon
chr13:101021866-101022041
Coord A exon
chr13:101025860-101025871
Coord C2 exon
chr13:101028404-101028615
Length
12 bp
Sequences
Splice sites
3' ss Seq
TTGTTGGTTTTCGCCTGCAGATT
3' ss Score
10.79
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
GCACGTACTGGACCAACCCCCAGTTTAAAATCCATTTGGATGAGGTGGATGAGGACCAGGAGGAGGGCACCAGTGAACCCTGCTGTACCGTGCTGCTGGGTCTGATGCAGAAGAATCGAAGACGTCAAAAGAGGATCGGCCAGGGCATGCTCAGCATAGGCTACGCTGTCTACCAG
Seq A exon
ATTCCCAAGGAG
Seq C2 exon
TTGGAGAGTCACACGGATGCACACCTTGGCCGGGACTTCTTCCTGGGACGCCAGCCCTCTACCTGCTCCAGCACTTACATGAACCTTCGGGAGGTGTCCAGCAGGGTCCGACTCCCCCCGGGACAGTACCTGGTGGTGCCATCCACCTTCGAGCCCTTCAAGGATGGTGACTTCTGCTTGAGGGTGTTCTCAGAGAAGAAGGCCAAGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003468-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(36.7=100)
A:
PF0106717=Calpain_III=FE(1.9=100)
C2:
PF0106717=Calpain_III=FE(44.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGGTCTGATGCAGAAG
R:
GTGTGCATCCGTGTGACTCTC
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]